There is no such thing as "The RetroPie".
Raspberry Pi is the hardware; RetroPie is the software operating system that is installed onto it.
The easiest and best way to play Amiga games on RetroPie OS is to make sure the P-UAE core is installed. I don't recommend installing experimental packages or standalone emulators over just installing the Libretro cores themselves, because the cores allow you to use the Libretro shaders and by using Libretro cores, it means you can manage your preferred settings globally across all cores.